Is [Normal] selected for the image quality level in the scan settings?
Try scanning again after making the image quality level higher in the following procedure:
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On the touch panel of the ScanSnap, select the profile that you are using from the profile list in the home screen.
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Press the arrow at the bottom of the touch panel to display the scan settings.
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Press the image quality icon to change the image quality level.
Example: [Normal] → [Best]